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reference
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Documentation
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BLOGS
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- cytochrome bc1 discussion
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- SourceForge.net: JCAMP-DX
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vendors
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Maps
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crystallography
- The Dundee PRODRG Server (not prodrug)
- Improper Dihedral Angle Potentials
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- Professor Sung-Hou Kim's Homepage- SB3
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What-if
- WHAT IF
- what-check server Instructions
- stand-alone what-if: delete files
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- A crystallographer's guide to interpreting WHATIF output
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bcpl binding site
- Index of /pub/berry/bclsite
- TESS article, J. Thornton
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Home pages
- Professor Sung-Hou Kim's Home Page- CCHEM
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Papers and science
- Nature paper- short
- fespaper4
- ARC- On the mechanism of ubiquinol oxidation by the bc1-complex: the role of the Rieske subunit, and its mobility
- The Bifurcated Reaction
- The Bifurcated Reaction-photo grc?
- ARC- Movie - Mechanism of the Qo-site
- Structure of a water soluble fragment of the 'Rieske' iron-sulfur protein of the bovine heart mitochondrial cytochrome bc1 complex determined by MAD phasing at 1.5 � resolution.
- BBA paper Gael Brasseur, Saribas and Daldal
- Rieske protein- JBC Search Result
- b6f Rieske - Zhang et al. JBC 271 (49):31360
- Prof. Ohnishi's page
- Interactions between the Cytochrome b, Cytochrome c1, and Fe-S Protein Subunits at the Ubihydroquinone Oxidation Site of the bc1 Complex of Rhodobacter capsulatus
- Xia et al. Science 277 (5322):60
Notes
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- file:/xray2/berry/mdave/modeling.not
- articles
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Bibliography
- NCBI_Author_search
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- Dutton biblio
- Konstantinov bibliography
- Palmer bibliography
- Crofts bibliography
- search TW denitrificans and TW cytochrome
- SCIENCE Online -- Wlodawer; et al. 279 (5349):302
- Nature Structural Biology: Survey
periodic chart data
- X-ray Absorption Edges
- Periodic Table - WebElements : zinc : radii data
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- THE BC1-COMPLEX SITE
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- Resp chain at Frankfurt
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- Cyt. bc1 project
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- Index of /~berry/private/ghosts/
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- Biochemical Pathways - Map No. C4 C5
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PDB Submissions
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- Autodep 1BCC (BNL-21756)
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- WHAT IF on 2bcc.pdb
- 2qcr autodep BNL-21092
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- PDB Submission - start here
- Old Mail Files
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- fibrillarin.gif
HTML
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companies, airlines, post office
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synchrotron sources
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- biomednet "Adapt or Die" article
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Genome search/analysis
- NCBI BLAST Home Page
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- Zhang's alignment tools
- SWISS-PROT funding crisis, help us !
- Genome Analysis: A Laboratory Manual
- Pedro's BioMolecular Research Tools - Part 1
- Sequence BNL-21092
- Chlorella cyt f sequence
- cyt f alignm w Chlorella
- SWISS-PROT: P23577
- PubMed protein query
Chromatium vinosum bc1 sequence
- Taxonomy (Blastochloris viridis)
- Chromatium vinosum cyt c1 seq
- Chromatium vinosum cyt b seq
- Chromatium vinosum Rieske sequence
Web Courses
- LLNL Structural Biology: B&BRP Overview and Research Highlights FY 95-97
- Physical Biochemistry Home Page
- ALIGNMENT OF SEQUENCES OF CYTOCHROME b FROM BACTERIA
- Fibrillarin/Me-transferase superposition
- cyt b6 sequence alignments
- b6f su-iv sequences
- Chloroplast/cyanobacterial Cytochrome b6 sequences
Graphics & printers
- Color Printer Online Log Book
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- Berkeley Lab Computing Sciences Services
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- Graphics Facility FAQ #2
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computer utilities/applications
- PROGRAM -- FIT
- Connolly Surfaces
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- SETOR home page
- HONIG LAB- GRASP, DELPHI
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- grasp
- MolScript: The Official Web Site
- Molscript v 1.4
- Raster3D (photorealistic molecular graphics)
- render - Raster3D package
- WhirlGIF 2.01
- Adobe Acrobat
- RasMol
- XV by John Bradley
- BUCS: Introduction to xv: an Image Editor for X Windows
- XV
- PROTEIN MOLECULE GIFS
Coleagues' institutions
- Monash University: Monash University
- Technische Universit�t Berlin
- Max-Volmer-Institut f�r Biophysikalische Chemie und Biochemie
- Fevzi Daldal
- Johann Wolfgang Goethe Universitaet
- http://www.klinik.uni-frankfurt.de/zbc/bioch_1.htm
- [Institut de Biologie Physico-Chimique] IBPC page d'accueil
- J-L. Popot: Structure and folding of membrane proteins
- Directory of I.B.P.C.
- Annuaire Informatique
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- Pfizer - Innovation in Research, Medicine, Health, Surgery, Animal Care
- The University of Arizona
- Max-Planck-Institutes
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LBL
- ISS Home Page
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Publishing
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- To Know Ourselves: The U.S. Department of Energy and the Human Genome Project
- Changing your Directory Listing at LBNL
- Department of Biophysics and Biomolecular Structure
NIH
- NCRR Home page -research resources
- OER: Peer Review Policy and Issues
- NIH Office of Extramural Research - Grants
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- CCSO email & Phonebook - NIH
- NIH phonebook
- DRG Referral and Review
- CRISP: Computer Retrieval of Information on Scientific Projects
- Directory of /pub/nih-image
- CRISP - Computer Retrieval of Information on Scientific Projects, Query Form
U.C. Berkeley
- MCB Upcoming Seminars
- Structural Biology, Fall 1998
- UCB Library Collections and Resources
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- CHEMISTRY 104A HOMEPAGE
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- Seminars in the College of Chemistry
- Seminars for the week of Nov. 18-22 1996
upcoming meetings
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- BLAST Search
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- Zhaoleis session ata ACA 97
- 10th EBEC 1998
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- Biophysical Society Annual Meeting
- International Conference in Harima
- ICBMB The 17th International Congress of Biochemistry and Molecular Biology
- FASEB Meetings and Conferences
people's bookmarks
- 's Bookmarks
- Edward Berry's Bookmarks
- Directory listing of /usr3/people/berry/.netscape
- Hongming Wang's Bookmarks
- Kyeong Kyu Kim's Bookmarks
- Lan Huang's Bookmarks
Journals
- ScienceDirect - FEBS Letters, Volume 435, Issue 2-3, 18 September 1998
- PNAS -- Browse & Search All Issues
- Stockton Journals - health science
- Biochemistry
- Technical Tips Online
- Science Magazine
- Your Room
- Elsevier Science Home Page
- Journal: BBA (Elsevier Science)
- BBA - Bioenergetics
- CO in Structural Biology
- Structural Biology, Fall 1998
- BioMedNet Library Charges
- Science's Next Wave
- Nature - International weekly journal of science
- Nature guide to authors
- Nature Structural Biology
Maps
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- east bay map
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- MapQuest! Interactive Atlas
- user home page -MapQuest! Interactive Atlas
- Welcome To MapQuest!
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- MapQuest! Interactive Atlas - View
- TMS Direct Map Request Instructions
- MapQuest! personal home page
- MapQuest! Interactive Atlas LOGIN
- MapQuest! Interactive Atlas
- GIF image 600x460 pixels
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- MapQuest Services!
mass transit
- BART
- Bay Area Rapid Transit District
- Bay Area Transit Information
- Caltrain
- RMV: Zugang vom Internet
Nobel Folder
- The Nobel Foundation
- Nobel prize in Chemistry 1988
- Chemistry 1997
New Folder
- Rescol canadien - Canada's SchoolNet
- Home Page of VolcanoWorld
- Lab Meeting Schedule
ICE
- CPK model of 1ICE
- 1ICE.PDB protein database file
- model picture 1ICE ice 1
- model picture 1ICE ice 2
- model picture 1ICE ice 3
- model picture 1ICE ice 4
- CPP32 (ICE-like enzyme) STRUCTURE
- ftp://iubio.bio.indiana.edu/molbio/ibmpc/paw.readme
- http://www.access.digex.net/~kfl/les/cryonet/2508.html
- Alcor Life Extension Foundation, Cryonics, & Cryogenics
- Mars Global Surveyor Home Page
- College Physics for Students of Biology and Chemistry
- Yelloweb Europe Directory
- Orientation - Asia's Web Directory
- CVRL Color & Vision database
- Lycos: Your Personal Internet Guide
- ALIGNMENT OF SEQUENCES OF CYTOCHROME b from ANIMAL to YEAST
- Live San Francisco Bay View
- EFF's (Extended) Guide to the Internet - Library Catalogs
- Search Here, There, and Everywhere
- Document Reader
- The World-Wide Web Virtual Library: Subject Catalogue
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- WALZ Homepage
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- 1996 OHER Abstracts
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- SERS - The Science and Engineering Research Semester for Undergraduate Students
- Biophysical Chemistry (Chem130a) Homepage
- ER Grants and Contracts
- Program Announcement LAB97-10
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- Berkeley Lab Laboratory Directed Research and Development Program
- Diffraction Data
- Matt's Script Archive: HTTP Cookie Library Readme
- William P. Jencks
- UC-ACCESS
- 3-D CRYSTALS OF CYTOCHROME REDUCTASE--A MEMBRANE PROTEIN<br>
- NCBI BLAST Home Page
- UCB Summer Sessions -- '97 Home Page
- Property Services Home Page
- Structural Biology and Synchrotrons
- File Manager For Forms - IRS
- Uppsala ODICT Server
- Welcome to NetTax '9X
- CIAC Security Web Site
- AOL4FREE.COM Trojan Horse Program Destroys Hard Drives
- ftp://rigel.bmc.uu.se/pub/heteros/hetero.pdb.Z
- ACA'97 Sessions Listing
- ACA Home Page
- Amino Acid Hydrophobicity
- SWISS-PROT: P08197
- gopher://pdb.pdb.bnl.gov/
- The Genetic Codes
- Codon Usage Database
- ISS Home Page
- On-line Chinese Tools
- Protein Crystallography at the Stanford Synchrotron
- RIDES On-line
- Science Magazine Online
- PDB Waiting-Pending List
- Refinement
- Hampton Research - Solutions for crystal growth...
- Cryo Notes 1995
- J
- Evaluated MEDLINE
- GIF image 1008x752 pixels
- Berkeley Lab Currents -- February 21, 1997
- Atlas of Protein Side-Chain Interactions
- SWISS-PROT: P21296
- LDRD TABLE OF CONTENTS
assorted
- Dorothy Hodgkin meeting
- weather forecast
- gopher://gopher.nih.gov:70/00/gopherlib/data/studysect/BULLETIN.GOPHER
- gopher genbank
- Planet Earth Top Gopher server
- Herpetology Collection
- IUBio Archive for Biology data and software
- Boulevards | Dallas.com
- Wildly Elegant : How to contact us
- readme f2c fortran to c converter
- The World-Wide Web Virtual Library: Biosciences
- Bookmarks- yet to be organized
- NERSC - Getting Started - Allocations
- LBL- Accessing and Navigating the Toolkit
- file:/usr11/scratch/berry/web/Potato_bc1.html
- Frog & toad Pictures
- NIH gopher to molbio databases
- Web Information
photos and art
- Jiang LiHong
- Eric's Bryce Pictures
- Rosie
- JPEG image 1753x1175 pixels
- JPEG image 480x640 pixels
- Vivian Chow Picture Album provided by Peter Chan
- Frog & toad Pictures
- Mauro's picture
- Directory listing of /usr3/people/berry/.netscape-cache
- Directory listing of /usr12/scratch/berry/web
Chinese Utilities
- On-line Chinese Tools
- Tiger Network Technology
- Chinese Computer Digest
- Read Chinese in Other Systems
- Chinese PostScript I Font for Windows & Mac Price
- Directory listing of /usr12/scratch/berry/rave_doc
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Netscape's bookmarks
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bookmarks on linuxpc
- Crystallography & NMR System - Linux
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crystallography
- PDB guide
SR & Neutron beam sources
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digital microscopy
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BIOENERGETICS
- Rb. sphaeroides bacterioferritin
- The Thermosynthesis Home Page
- Complex II subunits/sequences
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- THE BC1-COMPLEX SITE
- THE BC1-COMPLEX SITE
- Cyt. bc1 project
inhibitors
- Directory listing of /J|/Figures/inhibitors
- Qi-site inhibitors (gif)
- http://sb20.lbl.gov/cytbc1/private/crofts/old/halo-moa.gif
- http://sb20.lbl.gov/cytbc1/private/illbegood/basf/iodomoa.gif
- bc1 sequences of beef, potato, yeast
- NPS@ : Rb sequences aligned w beef, chick, yeast
- NCBI Sequence Viewer
- Putative cyt f dimer
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- Lecture 19, Factors determining rates of electron transfer
- stigmatellin structure
- Working Model ox phos
- The bc1-complex
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- L.t. gel
- Cyt b topology/secondary structure
- GIF image 510x650 pixels
- Cyt b secondary structure
- cyt b secondary (DSSP)
- cyt c1 secondary (DSSP)
- DSSP of 1HRC (edit for other structures)
- Structure cyt c4 - 1ETP
- Structure cyt c1 - chime
- DSSP analysis of bc1 subunits
- Cyt f. paper for Biochemistry
- revised cyt f secondary
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- Figure Legends:
- Cytochrome cbb3 cytochrome oxidase
- Two ISP with cyt b, c1
- Figure 1
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- ATP synthase
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- What registry entry controls default browser under Win95?
- NiceSite view of PROSITE: PDOC00171 (documentation file)
- NiceSite view of PROSITE: PDOC00169 (documentation file)
- Animation Movies of ATP Synthase
- George Oster
- Potato cyt c1- 17 or 77 aa preseq?
archaea CXXCH
- gi|2649381
- pir||G64488
- dbj|BAA79612.1|
- pir||S62197
- sp|O26357|R24E_METTH
- dbj|BAA31070.1|
- emb|CAB50623.1|
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- gi|2621853
Kim group
- Professor Sung-Hou Kim's Home Page- CCHEM
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Literature
- Local PDF files of Literature
- Brandt- Q-displacement
- Hunte . . . Michel yeast bc1
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- Crofts et al. 99 biochem paper 1
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- PNAS E272 paper- Crofts et al.
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- Rao BK and Kramer- inhib Cu in b6f
- Horvath, Berry, Maslov: RNA-Editing
- chi et al cyt f biochemistry
- Iwata ISP paper
- Zhang et al. Nature
- Xia et al. Science paper
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- An ancestral mitochondrial DNA resembling a eubacterial genome in miniature
- Popot b6f
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- Nitschke.rtf
- Iwata et al. Complete Structure . . .
- Oh-Oka - Itoh: Chlorobium
- Yagi+Hatefi: Rev electron transfer
- Breyton, Popot - monomer dimer b6f
- Brandt & Ukun
- Braun-Schmitz
- Denke . . . BLT
- Ubbink et al cytf-PC
- Yu-MPP activation in beef bc1
- mj396 structure paper, HMW,David et al
DIRECTORY
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Harvard
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NT directories
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Journals
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- Blackwell Synergy - FEBS Journal
sequence analysis
- BLAST Search
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- NPS@ : CLUSTALW multiple alignment
- Jalview - Java multiple alignment editor examples
more ClustalW
- Clustal W version 1.5 April 1995: Input to the Program
- ClustalW & ClustalX at CSC
- CLUSTALW
- CLUSTALW interactive Muliple Sequence Alignment at EBI
- New Bookmark
- Rhodobacter sphaeroides genome: Microbial Sequencing at JGI
- ProSAL - Protein Sequence Analysis Launcher
- META PredictProtein server
- BCM Search Launcher Home Page
- PubMed protein query
- Prot�ine : M.M., pI, composition, titrage
- Cutter
- ExPASy Molecular Biology Server
- ExPASy - ProtParam tool
- Membrane Protein (Transmembrane) Secondary Structure Prediction
- RECOGNITION SITES OF RECTRICTION ENZYMES
- GENETIC CODE
- AMINO ACIDS
- Tm Determination
- Plasmid Miniprep
- Plasmid Miniprep Isolation
- Index: Vector - Sequences, Restriction Sites and Maps
Genomes
- Rhodobacter sphaeroides genome: Microbial Sequencing at JGI
- Integrated genomics- capsulatus - ERGO Home Page
- ERGO List of Genomes-Organism Models and Overviews
- TIGR Microbial Database
- Genome- Leishmania
- The US Poultry Genome Project Website
Mol biology
- Novagen Frequently Asked Questions
- WebElements periodic table of the elements
Biology
- Glossary of Biochemistry and Molecular Biology
- own biology glossary
- Jeroen's biology glossary
- Agilent - Lab-on-a-Chip products
- PSI Books
Travel
- Expedia Travel -- discount airfare, flights, hotels, cars, vacation packages, maps
- Official LaGuardia Airport Home Page - Port Authority of NY & NJ - AVIATION
- United Airlines
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NIH
- Commons
- PHS 2590 - section_2.html
- National Institutes of Health (NIH)
- Application for Continuation of a Grant, PHS 2590
- CRISP - Computer Retrieval of Information on Scientific Projects, Query Form
UCBerkeley
- Structural Biology, Spring 2001
- UC Berkeley - Welcome