Bookmarks

SGI Bookmarks

Maps

Maps

Weiskotten- syracuse ny - Google Maps

Personal Toolbar Folder

Bio tools

PDB
RCSB Protein Data Bank
ProteinBlast
BLAST
EBI:: Tools:: WU-BLAST2 Protein
CLUSTALW
EBI Tools: ClustalW2
ClustalW Multiple Sequence Alignment (@BCM)
ExPASy Proteomics Server
Entrez Taxonomy
DbClustal
EMBOSS Explorer
Compendium of Pesticide Common Names
HIC-Up
Saccharomyces Genome Database
BBSRC ChickEST Database
backup.html
Dali server
chemguide: helping you to understand Chemistry - Main Menu
Autodep Input Tool(V0.903Beta)
Primer designing tool
OligoCalc: Oligonucleotide Properties Calculator

reference

Berkeley Lab Library Journals LBNL Journals
Journal of Biological Chemistry
JBC -- Archive of Issues by Date
Biochemistry Home Page (ACS Publications)
Proceedings of the National Academy of Sciences
ISI Web of Knowledge [v.4.1] - Web of Science Home
Scirus
MSDS Databases
MSDS Salicylamide,N-(7-butyl-4,9-dimethyl-2,6-dioxo-8-hydroxy-1,5-dioxonan-3-yl)-3-formamido- CAS 60504-95-2 MSDS * Blastmycin, deisovalery- * N-(7-Butyl-8-hydroxy-4,9-dimethyl-2,6-dioxo-1,5-dioxonan-3-yl)-3-formami dosalicylamide * Deisovalerylblastmycin
Index of file:///tb/windows/jdisk/HTMLbiblio/
USGS Earthquake Hazards Program » ShakeMap Archive
MolScript v2.1: Colour names
MolScript: The Official Website
Chlorophyll - Wikipedia, the free encyclopedia
CCP4 Program Documentation
X-PLOR On-line Manual
ISI Web of Knowledge [v3.0]
CCP4 Program Documentation
WWWebster Dictionary - Search screen
Abbreviations and acronyms dictionary: Find definitions for over 4,198,000 abbreviations, acronyms, and initialisms
Chinese Character Dictionary- make gif's
A to Z o O (O manual)
Crystallography & NMR System
Tide Tables
Computer History Museum
vol1_08.jpg (JPEG Image, 2544x1696 pixels)
vol1_08.jpg (JPEG Image, 2544x1696 pixels)
vol1_08.jpg (JPEG Image, 2544x1696 pixels)
NETS - Find Equipment [LDAP authenticated]
Index of file:///usr/src/linux-2.4.21-52.EL/Documentation/
2n6282 datasheet 2n6282的参数 2n6282规格书 2n6282技术资料 2n6282 데이터시트 2n6282 データ・シート application notes
oaa-eden.jpg - Image - Photobucket - Video and Image Hosting
MOSFLM 7.0.3 User Guide
CCP4 Program Documentation
Biochemical Society Transactions
LBL Journals
Microsoft Technical Communities
The Happy Hacker -- the web site computer criminals don't want you to read!
Lunar Calendar 2009
Julian Day Table

Scientific groups

Abteilung Angewandte Genetik

ScienceDirect - Biochemical and Biophysical Research Communications, Volume 384, Issue 4, Pages 401-540 (10 July 2009)

Documentation

PHENIX Documentation Home
Structure refinement in PHENIX
CCP4 Documentation
Crystallography & NMR System
Coot
Coot FAQ
Active Jump HTML Tutorial
Running Linux (O'Reilly)
Kevin Cowtan's Picture Book of Fourier Transforms
The Interactive Structure Factor Tutorial
freebasic.net :: Group Control Panel
MSDN: Microsoft Developer Network
SUNY Upstate Medical University:Mass Spectrometry and Proteomics:SUNY Upstate Medical University
SF-Tool
eTBlast > Search
BCSB_beamline_features
Foot Pictures Slideshow: Photos of Bunions, Corns, Warts, and More
XRayView Download
The PROMISE Database home page
ADIT V12.812 * * * * Your Session Restart ID is 2009-Mar-28.20.30.32.466094.trp.lbl.gov.21597
Kevin Cowtan's Book of Fourier, University of York, UK
USF - Uppsala Software Factory

PubMed Home
Google
Wikipedia

localpages

Cyt. bc1 project
Complex II Home Page
Ed Berry Research Group
Bioscience Bookmarks
Index of /cytbc1/inhibitors
SHARP Control Panel
Physical Biosciences Division at Berkeley Lab
Lawrence Berkeley National Laboratory
Hewlett Packard
hp color LaserJet 4650
Pre-award:Research Administration/Research Development:SUNY Upstate Medical University
:Department of Biochemistry:SUNY Upstate Medical University
RNPD599EB - Web Image Monitor
sb20 pages, local copy
SUNY Upstate Medical University: Information Management & Technology
SUNY Upstate Medical University:Mass Spectrometry and Proteomics:SUNY Upstate Medical University
Jeff C. Freedman
Administrative Information Systems
Autodep Input Tool(V0.903Beta)
Autodep Input Tool(V0.903Beta)
XDS Package
iPage:SUNY Upstate Medical University
SUNY Upstate Medical University Health Sciences Library - Upstate Journals
SUNY Upstate Medical University: Information Management & Technology
Novell WebAccess
:Department of Biochemistry:SUNY Upstate Medical University
Office of Environmental Health & Safety::SUNY Upstate Medical University
BioSafety Committee
TakeOut Xpress - Home
IBC Basic Science Research:Research Administration/Research Development:SUNY Upstate Medical University
Administrative Information Systems
iPage:SUNY Upstate Medical University
Self-Serve Login
Syracuse - New York Weather Forecast on Yahoo! Weather
Minagawa 新潟薬科大学|薬学部|教員紹介
Publications, Ed Berry, Berkeley web page
Berry pubs (pdf dir)

webtools

Bookmarks
DNS Stuff: DNS tools, DNS hosting tests, WHOIS, traceroute, ping, and other network and domain name tools.
email checker: Interactive DNS MX-verify CGI
What Is My IP Address? - IP Address Lookup, Internet Speed Test, IP Info, plus more
AOL Mail (2)
Employment Opportunities in the Department of Biochemistry and Molecular Biology at Colorado State University
PeopleFinders.com | Internet People Search & Public Records
LBL syslog report
Google account
USF - Uppsala Software Factory
HIC-Up
A-to-Z of O
eBay - New & used electronics, cars, apparel, collectibles, sporting goods & more at low prices
Google Talk
Reverse Lookup on AnyWho
Log in to myAOL, your home page for weather, calendar, horoscopes, mail and more
PSI Structural Genomics Knowledge Base

BLOGS

All I Really Need To Know I Learned From 360K Floppies | The ChangeLog
SourceForge.net: Basilisk II forum
SourceForge.net: Personal Page for eaberry
SourceForge.net: SpectralWorks
OpenSpectralWorks Project
SourceForge.net: SpectralWorks Project: Admin: Summary
Bulb Direct - Replacement bulbs & light bulbs for your equipment
Find a Notebook, Desktop, Server, Printer, Software, Service, Monitor or TV at Dell.
cytochrome bc1 discussion
Complex II discussion
SourceForge.net: JCAMP-DX
Picasa Web Albums - Edward
sharon berry
Welcome to Gmail
USB keyboard disconnect with ps2/usb converter/splitter - LinuxQuestions.org
PSI Structural Genomics Knowledge Base
SourceForge.net: linux-decnet » home

vendors

Sigma-Aldrich
Sigma-Aldrich Home Page - United States
ALEXIS Biochemicals: Home
Welcome to VWR International
Fisher Scientific - Scientific Standard
TIAA-CREF - Retirement planning for those in the academic, medical, cultural & research fields.
Staples.com®. that was easy® -- Office Supplies, Technology, Furniture & more!
BUY PLEXIGLASS - How to Place an Order On-line at ePlastics - Where to buy plexiglass
eBay - New & used electronics, cars, apparel, collectibles, sporting goods & more at low prices
RadioShack- Audio/Video Electronics, MP3, LCD TVs, GPS, Digital Cameras, DVD Players, Accessories
Dickies® - 1144624 2 PACK T-SHIRTS
Amazon.com: Online Shopping for Electronics, Apparel, Computers, Books, DVDs & more
Magellan GPS
University Hospital: Home
Products, NEB
Important Information
Empire Plan Providers and Pharmacies
http://www.geoaccess.com/awp/gateway.asp?guid=3fed4c61-ae39-465f-8b7a-bb3e9c38aa36&prodid=&serveaspcp=&vguid=dbab3f97-3434-47d3-8e80-1ea9d57eb7b4&languagetype=&provdirurl=&srchtype=&qualityvendor=&logcriteria=&print=false&mode=&displayresult=&browsercheck=&rolecode=&speccat=&costqualinfo=&alphaprefix=&brand= & gateway=false&natdir=dental
Sleepmaster :: Sleep Accessories - New York
Waters: Support List Page
English proofreading & editing of academic, science and medical research papers, manuscripts and journal articles : Nature Publishing Group Language Editing
LenderLogin.aspx
Accurate Real Estate Appraisals
Cheap Flights, Airline Tickets, Cheap Airfare & Discount Travel Deals - Kayak.com
Proteomics services: 2D Gel & Protein ID by Mass Spectrometry

Maps

Campus Map
weiskotten.jpg (JPEG Image, 990x711 pixels)
Map of Berkeley, CA by MapQuest
MAPS directory

index to Der Feldmarschall's pages

Sharp front panel
when asked for login, use SHARP<BR>
Kim-group Protein Crystallography: Local Software Documentation
Edward Berry&#39;s Bookmarks

crystallography

The Dundee PRODRG Server (not prodrug)
Improper Dihedral Angle Potentials
Improper Dihedral Angle Potentials
Professor Sung-Hou Kim&#39;s Homepage- SB3
SHARP user manual : Chapter 0
Home Page of Axel Brunger&#39;s Research Group
The X-PLOR 3.1 manual online
CNS
CNS-Solve 1.0 manual
CCP4BB members mailing list
CCP4 restrain.doc
X-ray diffraction data collection
ECAnews - Home Page
SHELX readme.htm
ARP/wARP Home Page
ARP/WARP manual
PDB Submission - start here
dead- PDB Contents Guide, Ver.2.1 (draft)
PDB Contents Guide, Ver.2.1 (draft)

What-if

WHAT IF
what-check server Instructions
stand-alone what-if: delete files
Send a new protein to be checked.
A crystallographer&#39;s guide to interpreting WHATIF output

Home page for Solve--Automated structure solution for MIR and MAD
WWW O
No Title
O Manual at Yale
O General Description
Merge_atoms
Home Page of T.A.Jones
Uppsala Software Factory
HIC-Up
Gerard KleywegtFAQ
Directory listing of /usr12/scratch/berry/rebtut/manuals
CCMS Software -- XtalView
XTALVIEW manpage
XtalView WWW Table of Contents
Description of the DSSP program
Buster Development Group - Bricogne; Blanc, Evans, Paciorek, Roversi, Vonrhein
Directory listing of /sb/xray/sharp/docs/manual
CCP4 Program Documentation
CCP4/3.4 tutorials
CCP4 Program Documentation
CCP4 vers 3.2 .doc files
CCP4BB.news
CCP4BB old messages
BMCD Overview
CCP4 Program Suite
GMRP Manual
Directory listing of /sb/xray/ccp43/doc
Index of /modeling/drugbank/compounds/structures
XDL_VIEW - An X-Windows Based Toolkit
Mosflm at SSRL
mosflm_user_guide.doc
Uppsala Software Factory - DEJAVU Manual
SCOP: Class: Membrane and cell surface proteins and peptides
Glasgow Protein crystallography Home Page

bcpl binding site

Index of /pub/berry/bclsite
TESS article, J. Thornton

PDB FTP Server
PDB: SF&#39;s directory
PDB: SF&#39;s dir (FTP)

Home pages

Professor Sung-Hou Kim&#39;s Home Page- CCHEM
Home page on sb computers at ucb
Petra Fromme
A. Chen - Sequencing Rieske
UC Berkeley - Welcome
Wemmer Group Personnel
MCB Faculty Research Interests
CCHEM Faculty
Tinoco Group Home Page
Bjorn Walse&#39;s HOME PAGE
The Student Run Cal Berkeley Home Page
Illinois Natural History Survey HTTP Server Index
College of Charleston Home Page
Cornell University Home Page
XIN CHEN&#39;S HOME PAGE
Michael B. Berry home page- good example

biophys soc
Biophys. Soc. news
GIF image 510x650 pixels

Papers and science

Nature paper- short
fespaper4
ARC- On the mechanism of ubiquinol oxidation by the bc1-complex: the role of the Rieske subunit, and its mobility
The Bifurcated Reaction
The Bifurcated Reaction-photo grc?
ARC- Movie - Mechanism of the Qo-site
Structure of a water soluble fragment of the &#39;Rieske&#39; iron-sulfur protein of the bovine heart mitochondrial cytochrome bc1 complex determined by MAD phasing at 1.5 � resolution.
BBA paper Gael Brasseur, Saribas and Daldal
Rieske protein- JBC Search Result
b6f Rieske - Zhang et al. JBC 271 (49):31360
Prof. Ohnishi&#39;s page
Interactions between the Cytochrome b, Cytochrome c1, and Fe-S Protein Subunits at the Ubihydroquinone Oxidation Site of the bc1 Complex of Rhodobacter capsulatus
Xia et al. Science 277 (5322):60

Notes

Directory listing of /xray2/berry/text
file:/xray2/berry/mdave/modeling.not

articles
Bioscience Bookmarks

Bibliography

NCBI_Author_search
W.A.Cramer biblio
von Jagow Bibliograhy
Uli Brandt Bibliography
Trumpoer biblio
Mauro D.-E. biobliography
Dutton biblio
Konstantinov bibliography
Palmer bibliography
Crofts bibliography
search TW denitrificans and TW cytochrome
SCIENCE Online -- Wlodawer; et al. 279 (5349):302
Nature Structural Biology: Survey

periodic chart data

X-ray Absorption Edges
Periodic Table - WebElements : zinc : radii data

Crystallography Bookmarks
Directory & reference Bookmarks
THE BC1-COMPLEX SITE
The Chaperonin Home Page
Cytochrom Oxidase Home Page
Resp chain at Frankfurt
Ed Berry Research Group
Cyt. bc1 project
Cytochrome f project
Index of /~berry/private/ghosts/
Index of /~berry/private/RGD/PDB/
Biochemical Pathways - Map No. C4 C5
Dialup Access via ICS (Telephone Data Switch)
SSRL USER & STAFF PUBLICATIONS

PDB Submissions

BNL-24995 Reports
PDB Short entry for 3BCC
Autodep 1BCC (BNL-21756)
Autodep 3BCC (BNL-21732)
WHAT IF on 2bcc.pdb
2qcr autodep BNL-21092
1BCC WHAT IF Check report
2BCC WHAT IF Check report
PDB Submission - start here

Old Mail Files
IMAP4 Disk Usage for LBNL-Employee #172351
fibrillarin.gif

HTML

HTML quick reference
Publishing Web Pages at Lawrence Berkeley National Laboratory
NCSA--A Beginner&#39;s Guide to HTML, Part 1

companies, airlines, post office

FedEx | U.S. Home
United States Postal Service
https://www.ual.com/secure/
Sign On To Online Banking
ONSALE | The Text-Only Version
Directory of Freight Forwarding Services
IT&T - Calling Rates To All Countries
The Scholar&#39;s Workstation Computer Store
PriceCostco Online
Cody&#39;s Books: Independent Bookseller
NIPPON EXPRESS USA
Welcome to FedEx
UPS Home Page
American Type Culture Collection (ATCC)
United Rising Home Page
Southwest Airlines Schedule Request
USPS ZIP Code Lookup and Address Information
USPS ZIP+4 Code Lookup
Paracoccus denitrificans 13543
Boehringer Mannheim Biochemicals
Sigma Chemical Company Home Page
Avanti - The Phospholipid People 1-800-227-0651
BioSpace Home Page
Pharmacia Biotech HomePage
CLONTECH Home Page
Fluka - General Information
The Fisher Chemical Catalog 95/96
Hampton Research - Solutions for crystal growth...

Entrez Browser
PDB WWW Server

synchrotron sources

EMBL Hamburg Outstation
Enter/Edit NSLS Abstract Submissions
User Administration
Protein Crystallography at the Stanford Synchrotron
*Cryotools at the SSRL Crystallography Beam Lines
SSRL Description
*Peter Kuhn, Protein Crystallography Group
Protein Crystallography Beam Time Request
SSRL beamtime proposal
SSRL BEAM PORT SCHEDULE
SSRL - BL descriptions and Proposal sscheduling update
SSRL new proposal schedule
Users&#39;s web pages at SSRL beamline 7-1
How to Reach Us at SLAC
SSRL BEAM PORT SCHEDULE

ssrl end-of-run summaries
biomednet "Adapt or Die" article
Writers Block

Genome search/analysis

NCBI BLAST Home Page
NPSA-Clustalw
BR&#39;s Crystallographic Web Applets
Crystallographic Applets - Reciprocal Cell and� Vm
CLUSTALW interactive Muliple Sequence Alignment at EBI
CASP2: Home Page
The National Center for Biotechnology Information
THE INSTITUTE FOR GENOMIC RESEARCH
Zhang&#39;s alignment tools
SWISS-PROT funding crisis, help us !
Genome Analysis: A Laboratory Manual

Pedro&#39;s BioMolecular Research Tools - Part 1
Sequence BNL-21092
Chlorella cyt f sequence
cyt f alignm w Chlorella
SWISS-PROT: P23577
PubMed protein query

Chromatium vinosum bc1 sequence

Taxonomy (Blastochloris viridis)
Chromatium vinosum cyt c1 seq
Chromatium vinosum cyt b seq
Chromatium vinosum Rieske sequence

Web Courses

LLNL Structural Biology: B&BRP Overview and Research Highlights FY 95-97
Physical Biochemistry Home Page

ALIGNMENT OF SEQUENCES OF CYTOCHROME b FROM BACTERIA
Fibrillarin/Me-transferase superposition
cyt b6 sequence alignments
b6f su-iv sequences
Chloroplast/cyanobacterial Cytochrome b6 sequences

Graphics & printers

Color Printer Online Log Book
ImageWeb: Codonics ImageWeb, Integrated Printer Web Server
Printer Status: Updated Once a Minute
Berkeley Lab Computing Sciences Services
Molecular Graphics Facilty
Graphics Facility FAQ #2
Color Printer Online Log Book
Codonics Information #1

computer utilities/applications

PROGRAM -- FIT
Connolly Surfaces
GIF Construction Set
CMC Ribbons Software
SETOR home page
HONIG LAB- GRASP, DELPHI
GRASP Home Page
grasp
MolScript: The Official Web Site
Molscript v 1.4
Raster3D (photorealistic molecular graphics)
render - Raster3D package
WhirlGIF 2.01
Adobe Acrobat
RasMol
XV by John Bradley
BUCS: Introduction to xv: an Image Editor for X Windows
XV

PROTEIN MOLECULE GIFS

Coleagues&#39; institutions

Monash University: Monash University
Technische Universit�t Berlin
Max-Volmer-Institut f�r Biophysikalische Chemie und Biochemie
Fevzi Daldal
Johann Wolfgang Goethe Universitaet
http://www.klinik.uni-frankfurt.de/zbc/bioch_1.htm
[Institut de Biologie Physico-Chimique] IBPC page d&#39;accueil
J-L. Popot: Structure and folding of membrane proteins
Directory of I.B.P.C.
Annuaire Informatique
Annuaire Curie
Pfizer - Innovation in Research, Medicine, Health, Surgery, Animal Care
The University of Arizona
Max-Planck-Institutes
Max-Planck-Gesellschaft
Max Planck Institut f�r Biophysik

LBL

ISS Home Page
Berkeley Lab Procurement

Publishing

LBNL Document Submission Forms
Publishing at Berkeley Lab
LBNL&#39;s Technical and Electronic Information Department

RPM 2.10. Holidays (Rev. 9/96)
Welcome to Berkeley Lab Travel
Structural Biology Division - LBNL
LBNL Directory Services
Lawrence Berkeley National Laboratory
Databases and Databanks
To Know Ourselves: The U.S. Department of Energy and the Human Genome Project
Changing your Directory Listing at LBNL
Department of Biophysics and Biomolecular Structure

NIH

NCRR Home page -research resources
OER: Peer Review Policy and Issues
NIH Office of Extramural Research - Grants
National Institutes of Health (NIH)
CCSO email & Phonebook - NIH
NIH phonebook
DRG Referral and Review
CRISP: Computer Retrieval of Information on Scientific Projects
Directory of /pub/nih-image
CRISP - Computer Retrieval of Information on Scientific Projects, Query Form

U.C. Berkeley

MCB Upcoming Seminars
Structural Biology, Fall 1998
UCB Library Collections and Resources
Berkeley chem. Spring &#39;96 Seminars
The Society of Cal Integrative Biology Undergraduate Students (SCIBUGS) Home Page
Structural Biology
GLADIS and MELVYL
Telnet Melvyl
Structural Biology Seminars
UC Berkeley - Welcome
CHEMISTRY 104A HOMEPAGE
Biophysical Chemistry (Chem130a) Homepage
Chem130a Syllabus
Seminars in the College of Chemistry
Seminars for the week of Nov. 18-22 1996

upcoming meetings

ACA&#39;98 Sessions Listing
BLAST Search
Experimental Biology &#39;98 - Table of Contents
ACA&#39;98 11.01: MEMBRANE PROTEINS
ACA &#39;97 - MACRO-MACROMOLECULAR BIOLOGICAL COMPLEXES
Zhaoleis session ata ACA 97
10th EBEC 1998
Biophysical Society Abstract Submission Program
Fifteenth Eastern Regional Photosynthesis Conference
Biophysical Society Annual Meeting Information
1998 Annual Meeting Self-assembly Topics
EMBO Practical Courses
ASBMB Meetings
asbmb Program 1998
Biophysical Society Annual Meeting
International Conference in Harima
ICBMB The 17th International Congress of Biochemistry and Molecular Biology
FASEB Meetings and Conferences

people&#39;s bookmarks

&#39;s Bookmarks
Edward Berry&#39;s Bookmarks
Directory listing of /usr3/people/berry/.netscape
Hongming Wang&#39;s Bookmarks
Kyeong Kyu Kim&#39;s Bookmarks
Lan Huang&#39;s Bookmarks

Journals

ScienceDirect - FEBS Letters, Volume 435, Issue 2-3, 18 September 1998
PNAS -- Browse & Search All Issues
Stockton Journals - health science
Biochemistry
Technical Tips Online
Science Magazine
Your Room
Elsevier Science Home Page
Journal: BBA (Elsevier Science)
BBA - Bioenergetics
CO in Structural Biology
Structural Biology, Fall 1998
BioMedNet Library Charges
Science&#39;s Next Wave
Nature - International weekly journal of science
Nature guide to authors
Nature Structural Biology

Maps

campus map
stanyan st, SF map
emeryvillemap.gif
oakland.gif
east bay map
San Jose Map (for Asilomar trip)
MapQuest! Interactive Atlas
user home page -MapQuest! Interactive Atlas
Welcome To MapQuest!
MapQuest! Interactive Atlas Welcome!
MapQuest! Interactive Atlas - View
TMS Direct Map Request Instructions
MapQuest! personal home page
MapQuest! Interactive Atlas LOGIN
MapQuest! Interactive Atlas
GIF image 600x460 pixels
GIF image 600x460 pixels
MapQuest Services!

mass transit

BART
Bay Area Rapid Transit District
Bay Area Transit Information
Caltrain
RMV: Zugang vom Internet

Nobel Folder

The Nobel Foundation
Nobel prize in Chemistry 1988
Chemistry 1997

New Folder

Rescol canadien - Canada&#39;s SchoolNet
Home Page of VolcanoWorld
Lab Meeting Schedule

ICE

CPK model of 1ICE
1ICE.PDB protein database file
model picture 1ICE ice 1
model picture 1ICE ice 2
model picture 1ICE ice 3
model picture 1ICE ice 4
CPP32 (ICE-like enzyme) STRUCTURE

ftp://iubio.bio.indiana.edu/molbio/ibmpc/paw.readme
http://www.access.digex.net/~kfl/les/cryonet/2508.html
Alcor Life Extension Foundation, Cryonics, & Cryogenics
Mars Global Surveyor Home Page
College Physics for Students of Biology and Chemistry
Yelloweb Europe Directory
Orientation - Asia&#39;s Web Directory
CVRL Color & Vision database
Lycos: Your Personal Internet Guide
ALIGNMENT OF SEQUENCES OF CYTOCHROME b from ANIMAL to YEAST
Live San Francisco Bay View
EFF&#39;s (Extended) Guide to the Internet - Library Catalogs
Search Here, There, and Everywhere
Document Reader
The World-Wide Web Virtual Library: Subject Catalogue
CCP4 Program Documentation
HOT UC WWW Pages
WALZ Homepage
CCP4 Problem page
1996 OHER Abstracts
SERS LBNL Homepage
SERS - The Science and Engineering Research Semester for Undergraduate Students
Biophysical Chemistry (Chem130a) Homepage
ER Grants and Contracts
Program Announcement LAB97-10
Notice 97-10
Berkeley Lab Laboratory Directed Research and Development Program
Diffraction Data
Matt&#39;s Script Archive: HTTP Cookie Library Readme
William P. Jencks
UC-ACCESS
3-D CRYSTALS OF CYTOCHROME REDUCTASE--A MEMBRANE PROTEIN<br>
NCBI BLAST Home Page
UCB Summer Sessions -- &#39;97 Home Page
Property Services Home Page
Structural Biology and Synchrotrons
File Manager For Forms - IRS
Uppsala ODICT Server
Welcome to NetTax &#39;9X
CIAC Security Web Site
AOL4FREE.COM Trojan Horse Program Destroys Hard Drives
ftp://rigel.bmc.uu.se/pub/heteros/hetero.pdb.Z
ACA&#39;97 Sessions Listing
ACA Home Page
Amino Acid Hydrophobicity
SWISS-PROT: P08197
gopher://pdb.pdb.bnl.gov/
The Genetic Codes
Codon Usage Database
ISS Home Page
On-line Chinese Tools
Protein Crystallography at the Stanford Synchrotron
RIDES On-line
Science Magazine Online
PDB Waiting-Pending List
Refinement
Hampton Research - Solutions for crystal growth...
Cryo Notes 1995
J
Evaluated MEDLINE
GIF image 1008x752 pixels
Berkeley Lab Currents -- February 21, 1997
Atlas of Protein Side-Chain Interactions
SWISS-PROT: P21296
LDRD TABLE OF CONTENTS

assorted

Dorothy Hodgkin meeting
weather forecast
gopher://gopher.nih.gov:70/00/gopherlib/data/studysect/BULLETIN.GOPHER
gopher genbank
Planet Earth Top Gopher server
Herpetology Collection
IUBio Archive for Biology data and software
Boulevards | Dallas.com
Wildly Elegant : How to contact us
readme f2c fortran to c converter
The World-Wide Web Virtual Library: Biosciences
Bookmarks- yet to be organized
NERSC - Getting Started - Allocations
LBL- Accessing and Navigating the Toolkit
file:/usr11/scratch/berry/web/Potato_bc1.html
Frog & toad Pictures
NIH gopher to molbio databases
Web Information

photos and art

Jiang LiHong
Eric&#39;s Bryce Pictures
Rosie
JPEG image 1753x1175 pixels
JPEG image 480x640 pixels
Vivian Chow Picture Album provided by Peter Chan
Frog & toad Pictures
Mauro&#39;s picture

Directory listing of /usr3/people/berry/.netscape-cache
Directory listing of /usr12/scratch/berry/web

Chinese Utilities

On-line Chinese Tools
Tiger Network Technology
Chinese Computer Digest
Read Chinese in Other Systems
Chinese PostScript I Font for Windows & Mac Price

Directory listing of /usr12/scratch/berry/rave_doc

Apple Computer

AppleFacts Online
Apple Facts Online Desktop Computer Archive

Home page for Ed Berry
computer billing

IBM Thinkpad

IBM - ThinkPad
IBM Thinkpad Personal Computing Support
Auto/AIR Charger for IBM Thinkpad 380/385/560 Series ESI-B1207A EXTENDED SYSTEMS, INC.
IBM Thinkpad Automobile Power Adapter
McGlen AC adaptor
Viking Configuration Manual
ThinkPad
The Unofficial Iomega Page... J U I P. C O M

Computer sales

Customer Service Request Lookup
Price Watch(tm) - Street Price Search Engine
Okidata Home
OKIJET 2020
HP Shopping Village
McGlen.com/Your McGlen Account
McGlen Micro Inc. - Guided Search
Micro Warehouse Inc.: Your #1 Source for All your Computer Needs Online!
CNET Shopper.com: The Awesomely Useful Guide To Where To Buy Computer Products

BIK

Getting Started with the Berkeley Internet Kit for Macintosh
The Berkeley Internet Kit for Macintosh
BIK for Windows, version 5.1
C@B CD Frequently Asked Questions
Getting Started with the Berkeley Internet Kit for Macintosh
PC Windows and Networking Support - UC Berkeley
Using BIK applications
BIK Lite version 5.1 (Modem/home)

Atlas of Side-Chain and Main-Chain Hydrogen Bonding
Lycos: Your Personal Internet Guide
Introduction to FAXION
Jun Wang&#39;s Homepage
Chinatown
Wells Fargo&#39;s WWW Home Page
Protein Crystallography WWW Software Services Homepage
Welcome to Berkeley Lab Travel
ftp://expasy.hcuge.ch/pub/Graphics/000README.html
ExPASy - SWISS-3DIMAGE top page
Research Group Link
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mlphare\
truncate
scaleit
sfall
fft
CCP4 Program Suite : cad
CCP4 Interface Documentation

CCP4 bulletin board - sorted by date
HKL Home Page
Solve local
X-ray Absorption Edges
The RCSB Protein Data Bank
PDB: Status of unreleased entries
A_Z 0f O (manual)
WWW O
[o-info] stereo with sgi v6?
Home Page of Axel Brunger&#39;s Research Group
X-PLOR On-line Manual
X-PLOR On-line Manual
X-PLOR On-line Manual
CNS
CNS FAQ- Crystallography & NMR System
CNS
CNS
Uppsala Software Factory
SQUASH home page
SHARP installation Guide
SHARP Control Panel

SGI hardware/patches

Hardware related

van der Waals Radii
CSD HELPFILE
CSD Documentation
MolScript v2.1: Input file
MolScript: The Official Web Site
composite cpl binding site
Starting Apache
Molecular Structure Corporation Home Page
marresearch: Home Page
Protein-Protein Interaction Server
Crystallographic Applets - Reciprocal Cell and� Vm
Heavy Atom Databank
CAST for Protein Pockets and Cavities
HBPLUS Home Page
MolProbity
cctbx - Index of online examples

BIOENERGETICS

Rb. sphaeroides bacterioferritin
The Thermosynthesis Home Page
Complex II subunits/sequences
JPEG image 1008x752 pixels
THE BC1-COMPLEX SITE
THE BC1-COMPLEX SITE
Cyt. bc1 project

inhibitors

Directory listing of /J|/Figures/inhibitors
Qi-site inhibitors (gif)
http://sb20.lbl.gov/cytbc1/private/crofts/old/halo-moa.gif
http://sb20.lbl.gov/cytbc1/private/illbegood/basf/iodomoa.gif

bc1 sequences of beef, potato, yeast
NPS@ : Rb sequences aligned w beef, chick, yeast
NCBI Sequence Viewer
Putative cyt f dimer
Notes on the mechanism of the bc1 complex
Lecture 19, Factors determining rates of electron transfer
stigmatellin structure
Working Model ox phos
The bc1-complex
Ion Channel Diseases
Mitochondrial Disorders
LIGHT-HARVESTING IN BACTERIAL PHOTOSYNTHESIS
Cytochrome b Structure: EM and X-ray data
Biochemistry Seminars
Photosynthesis light reactions
Electron transfer by domain movement in cytochrome <i>bc</i><sub>1</sub>
L.t. gel
Cyt b topology/secondary structure
GIF image 510x650 pixels
Cyt b secondary structure
cyt b secondary (DSSP)
cyt c1 secondary (DSSP)
DSSP of 1HRC (edit for other structures)
Structure cyt c4 - 1ETP
Structure cyt c1 - chime
DSSP analysis of bc1 subunits
Cyt f. paper for Biochemistry
revised cyt f secondary
FEBS99 Talk Nice 1999. Slide 1
Figure Legends:
Cytochrome cbb3 cytochrome oxidase
Two ISP with cyt b, c1
Figure 1
ARB figures
AR Biochem. -- Berry et al. 69 (1): 1005 Data Supplement - Electronic Material
fespaper4
Nature paper- short
ATP synthase
Bacteriorhodopsin
JPEG image 5794x3000 pixels
Photosystem I
What registry entry controls default browser under Win95?
NiceSite view of PROSITE: PDOC00171 (documentation file)
NiceSite view of PROSITE: PDOC00169 (documentation file)
Animation Movies of ATP Synthase
George Oster
Potato cyt c1- 17 or 77 aa preseq?

archaea CXXCH

gi|2649381
pir||G64488
dbj|BAA79612.1|
pir||S62197
sp|O26357|R24E_METTH
dbj|BAA31070.1|
emb|CAB50623.1|
sp|Q57839|RPE2_METJA
gi|2621853

Kim group

Professor Sung-Hou Kim&#39;s Home Page- CCHEM
Professor Sung-Hou Kim&#39;s Homepage- SB3
Kim Group News. Kim-group Protein Crystallography: Local Software Documentation
Running O on Calvin Lab SGI&#39;s
Mail Kim group Members
CCP4 Program Documentation
Crystallography & NMR System
Crystallography & NMR System

Literature

Local PDF files of Literature
Brandt- Q-displacement
Hunte . . . Michel yeast bc1
Margulis&Chapman
Rhodothermus complex III - no Rieske
Crofts et al. 99 biochem paper 1
Crofts et al. 99 biochem paper 2
PNAS E272 paper- Crofts et al.
Current Opinions Croft & Berry
Rao BK and Kramer- inhib Cu in b6f
Horvath, Berry, Maslov: RNA-Editing
chi et al cyt f biochemistry
Iwata ISP paper
Zhang et al. Nature
Xia et al. Science paper
An ancestral mitochondrial DNA resembling a eubacterial genome in miniature
Popot b6f
Nitschke.rtf
Iwata et al. Complete Structure . . .
Oh-Oka - Itoh: Chlorobium
Yagi+Hatefi: Rev electron transfer
Breyton, Popot - monomer dimer b6f
Brandt & Ukun
Braun-Schmitz
Denke . . . BLT
Ubbink et al cytf-PC
Yu-MPP activation in beef bc1
mj396 structure paper, HMW,David et al

DIRECTORY

James N. Siedow
Fridovich, Ph.D.
Russian disc: PRODUCTS - [Le Petit prince - II]
UCL: People: Phone and Email Directory
MRC Laboratory of Molecular Biology, Cambridge, UK.
ChemNavigator.com
AltaVista Translations
Technische Universit�t Berlin
Uppsala University directory: Addresses & Home pages/In english
TU_Berlin Chem directory
Max-Volmer-Institut - Arbeitsgruppen - clickable picture
Mitarbeiterverzeichnis des MVI!
Columbia University Directory
Bioenergeticists Faces
Bioenergeticists GRC mailing list 1999
Registration List
Registration List & email, bioenerg GRC 2001
University Phonebook Server Lookup (.)
University College London
UCL Biochemistry Protein Analysis & Modelling
Imperial College of Science, Technology and Medicine
Iwata
Hauska�s Lab Home Page
Naturwissenschaftliche Fakult�t IV - Chemie und Pharmazie, Universit�t Regensburg
Structural Biology Labs, Biomedical Centre, Uppsala, Sweden

Harvard

BCMP Home Page
Harvard Medical School
Hongming Wang B.S.
phonebook
Member Directory
Welcome to the Hogle Lab
Griffin Weber&#39;s World

Alb.EinstCOM- Alphabetical Listing of the Graduate Division Faculty
Yale Molecular Biophysics Biochemistry Center Structural Biology
Matthias Ullmann&#39;s Home page
Biophysical Society Member Directory Search
Phonebook ns.uiuc.edu (Antony R Crofts)
Wemmer Group Home Page
Bj�rn Walse&#39;s HOME PAGE
Peter Luginb�hl
Biochemistry Department at Dartmouth College
Monash University Information Server: Error
Monash University: Monash University
AnyWho: Reverse Telephone Number Search - Find Person or Business using Telephone Number
AnyWho: Find Telephone Number, Email, Home Page URL, FAX, Toll Free Number, and Address
SWMed Departmental and Individual Home Pages
The Chemistry Faculty
UVA--Molecular Physiology
MPI Biophysik: Dept. of Mol. Membrane Biology: Dr. C. Roy D. Lancaster
DEPARTMENT OF BIOCHEMISTRY, UPPSALA UNIVERSITET
CCSO email & Phonebook - NIH
NIH phonebook
LISTE DES MEMBRES DU COMITE NATIONAL DE BIOPHYSIQUE
WWWebster Dictionary - Search screen
Dictionary Merriam-Webster
Gehring

SGI Directories

SGI bookmarks
Index of sb3 /private/
Index of /pub
Index of /pub/ccp4
Directory of /xray2/berry/inhib
login.com (cost centers)
Modeling Notes in mdave directory
crystal cell parameters
sb3:$wrk
Directory of /xray2/berry/text
sb3:$wrk/com
sb3:/$u11
$u11/molscript
Old Mail Files
Directory of sb3:/sb
sb3:/$u12
sb3:/usr3/people/
sb3:usr3/people/hmwang

NT directories

Directory listing of /F|/Figures
Directory listing of /F|/HTMLbiblio
Local PDF files of Literature
Directory listing of /F|/writing
Directory listing of /F|/cytc1
Directory listing of /J|/sequence
Directory listing of /J|/structanal
Directory listing of /A|
Database Information Page

Journals

Berkeley Lab Library Journals LBNL Journals
Library: Journals
ISI Citation Database Search Version 4.0
California Digital Library
My Profile
IDEAL Search
American Chemical Society Publications: Essential Resources for the Chemical Sciences
The EMBO Journal Online
Eu.J.Bioch.
Previous issues
Biochemical Society Transactions
Biophysical Society Homepage
American Chemical Society: ACS Publications Magazines & Journals
ScienceDirect - Biochimica et Biophysica Acta (BBA) - Bioenergetics - List of Issues
Biochemistry
Biochemistry Search Form (Web Subscribers):
Science Magazine
(IUCr) Crystallography Journals Online
Archives of Biochemistry and Biophysics
BioMedNet Library: browse
Elsevier Science: Authors
Journal of Bioenergetics and Biomembranes
Journal of biological chemistry
Journal of Molecular Biology
Eur. J. Biochem
Welcome to Annual Reviews
Annu. Rev. Biochem. -- Archive of Issues by Date
Elsevier Science: Browse
Proceedings of the National Academy of Sciences
ScienceDirect - Biochimica et Biophysica Acta (BBA) - Reviews on Biomembranes - List of Issues
ScienceDirect - Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology - List of Issues - Guest
American Chemical Society Publications: Journal of Agricultural and Food Chemistry Home Page
Blackwell Synergy - FEBS Journal

sequence analysis

BLAST Search
BLAST Search
PHI BLAST Search
NPS@ : CLUSTALW multiple alignment
Jalview - Java multiple alignment editor examples

more ClustalW

Clustal W version 1.5 April 1995: Input to the Program
ClustalW & ClustalX at CSC
CLUSTALW
CLUSTALW interactive Muliple Sequence Alignment at EBI
New Bookmark

Rhodobacter sphaeroides genome: Microbial Sequencing at JGI
ProSAL - Protein Sequence Analysis Launcher
META PredictProtein server
BCM Search Launcher Home Page
PubMed protein query
Prot�ine : M.M., pI, composition, titrage
Cutter
ExPASy Molecular Biology Server
ExPASy - ProtParam tool
Membrane Protein (Transmembrane) Secondary Structure Prediction
RECOGNITION SITES OF RECTRICTION ENZYMES
GENETIC CODE
AMINO ACIDS
Tm Determination
Plasmid Miniprep
Plasmid Miniprep Isolation
Index: Vector - Sequences, Restriction Sites and Maps

Genomes

Rhodobacter sphaeroides genome: Microbial Sequencing at JGI
Integrated genomics- capsulatus - ERGO Home Page
ERGO List of Genomes-Organism Models and Overviews
TIGR Microbial Database
Genome- Leishmania
The US Poultry Genome Project Website

Mol biology

Novagen Frequently Asked Questions
WebElements periodic table of the elements

Biology

Glossary of Biochemistry and Molecular Biology
own biology glossary
Jeroen&#39;s biology glossary

Agilent - Lab-on-a-Chip products
PSI Books

Travel

Expedia Travel -- discount airfare, flights, hotels, cars, vacation packages, maps
Official LaGuardia Airport Home Page - Port Authority of NY & NJ - AVIATION
United Airlines
Southwest Airlines

NIH

Commons
PHS 2590 - section_2.html
National Institutes of Health (NIH)
Application for Continuation of a Grant, PHS 2590
CRISP - Computer Retrieval of Information on Scientific Projects, Query Form

UCBerkeley

Structural Biology, Spring 2001
UC Berkeley - Welcome