Chicken Complex II (Succinate:CoenzymeQ oxidoreductase) sequences
For more details see this.
Sequences are from NCBI non-redundant database and the chicken genome project at Roslin Institute

and the Univ. of Delaware Chick EST Database
 

SQR FP:
xxMAAVVAASRSLAKCWLRPAARAWPAACQTHARNFHFTVDGKKNASTKVSDSISTQYPV
VDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDD
NWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQS
LQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIAL
CIEDGTIHRFRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHP
TGIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGC
GPEKDHVYLQLHHLPPQQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNY
KGQVITHVNGEDKVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRACALTIAETCKP
GEPVPSIKPNAGEESVANLDKLRFADGTIRTSEARLNMQKTMQSHAAVFRTGSILQEGCE
KLSQIYRDLAHLKTFDRGIVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDY
KLRIDEFDYSKPLQGQQKRPFEEHWRKHTLSYVDVKSGKVTLKYRPVIDRTLNEEDCSSV
PPAIRSY 667

patpk0054e6f        http://www.chickest.udel.edu/public_php/getSequence.php?seqId=60423&type=standard
603006608F1         http://www.chick.umist.ac.uk/cgi-bin/chickEST.cgi?show_seq=603006608F1 (down or moved)
XM_4190541GenBank   http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=XM_419054.1
AF095939            http://www.ebi.ac.uk/cgi-bin/dbfetch?db=emblcds&id=AAC72374
3340421             http://www.chick.umist.ac.uk/cgi-bin/chickEST.cgi?template_data=334042.1 (down or moved)
TC186560            http://www.tigr.org/tigr-scripts/tgi/tc_report.pl?tc=TC186560&species=g_gallus


 
 DNA alignment and consensus translation 
 
 
SQR IP:
  1 maaavvgvsl rrgvparflr aglrpvrgle avhgicrgaq taaaatsrik kfsiyrwdpd
 61 kpgdkprmqt yevdlnkcgp mvldalikik neldstltfr rscregicgs camniaggnt
121 lactkkidpd lskttkiypl phmyvvkdlv pdlsnfyaqy ksiepylkkk deskqgkeqy
181 lqsiedrqkl dglyecilca ccstscpsyw wngdkylgpa vlmqayrwmi dsrddyteer
241 laqlqdpfsl yrchtimnct rtcpkglnpg kaiaeikkmm atykekaaaa
gi|3851612|gb|AAC72372.1|   (AF095937)
UDELPATPK0036A2F udel.pat.pk0036.a2.f    Frame = +3



Chicken QPS1
  1 MAALVLRCVARRCLLARLSPGPSVHHVVPMATTAKEEMARFWEKNTKSSRPLSPHISIYKW  61
 62 SLPMAMSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVVKSLSLSPALIYSAKFALV 121
122 FPLSYHTWNGIRHLVWDMGKGFKLSQVEQSGVVVLILTLLSSAGIAAIS 170
Chicken NA alignment and consensus translation
UDELPATPK0079D4F    Frame = +2 
UDELPATPK0076F8F    Frame = +1, Frame = +3
FM_ROS050B11-T3-1   Frame = +1


Chicken QPS3:
17 AALLRGTLLRHSAVLTAAADRSAPA---RQSHGGAPQGHGSSKAASLHWTSERAVSALLL
GLLPAAYLYPGPAVDYSLAAALTLHGHWGLGQVITDYVHGDTPIKVANTGLYVLSAITFT
GLCYFNYYDVGICKAVAMLWSI

DKFZ426_16P18R1     Frame = +3
UDELPATPK0023E8F    Frame = +2
FM_ROS051C11-T3-1   Frame = +1
DKFZ426_16P18R1   AALLRGTLLRHSAVLTAAADRSAPA---RQSHGGAPQGHGSSKAASLHWTSERAVSALLL 179
FM_ROS051C11-T3-1    LRGTLLRHSAVLTAAADRSAPA---RQSHGGAPQGHGSSKAASLHWTSERAVSALLL 273
UDELPATPK0023E8F                                                  WTSERAVSALLL

DKFZ426_16P18R1   GLLPAAYLYPGPAVDYSLAAALTLHGHWGLGQVITDYVHGDTPIKVANTGLYVLSAITFT 359
FM_ROS051C11-T3-1 GLLPAAYLYPGPAVDYSLAAALTLHGHWGLGQVITDYVMEILLSKWLNTGL 417
UDELPATPK0023E8F  GLLPAAYLYPGPAVDYSLAAALTLHGHWGLGQVITDYVHGDTPIKVANTGLYVLSAITFT 181
DKFZ426_16P18R1   GLCYFNYYDVGICKAVAMLWSI 425
FM_ROS051C11-T3-1
UDELPATPK0023E8F  GLCYFNYYDVGICKAVAMLWSI 283




Sbjct: 584 RPRDRSAXARQTMVAPRRATAVPSCIPAWTXERAXSALLLGPAPRCYLXPGPLXTTPWCX 763
Sbjct: 764 LLSW--AWGLGQ 793
Sbjct: 190 LPARGAEGCAGSAHSSLLRSHHCRHRGSHPHW 95
xxx